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VEGAS

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'''Project website:''' http://gump.qimr.edu.au/VEGAS/
 
'''Project website:''' http://gump.qimr.edu.au/VEGAS/
  
 +
====Load SGE module====
 
The following Modules files should be loaded for this package:
 
The following Modules files should be loaded for this package:
 
<pre>
 
<pre>
 
  module load VEGAS/VEGAS-0.8
 
  module load VEGAS/VEGAS-0.8
 
</pre>
 
</pre>

Revision as of 14:55, 2 April 2012

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VEGAS is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.

Project website: http://gump.qimr.edu.au/VEGAS/

Load SGE module

The following Modules files should be loaded for this package:

 module load VEGAS/VEGAS-0.8