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VEGAS

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[http://gump.qimr.edu.au/VEGAS/ VEGAS] is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.
 
[http://gump.qimr.edu.au/VEGAS/ VEGAS] is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.
  
Vegas project page: http://gump.qimr.edu.au/VEGAS/
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'''Project website:''' http://gump.qimr.edu.au/VEGAS/
 
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====Load SGE module====
 
The following Modules files should be loaded for this package:
 
The following Modules files should be loaded for this package:
 
<pre>
 
<pre>
 
  module load VEGAS/VEGAS-0.8
 
  module load VEGAS/VEGAS-0.8
 
</pre>
 
</pre>
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[[Category:Software]]

Latest revision as of 09:19, 4 April 2012

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VEGAS is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.

Project website: http://gump.qimr.edu.au/VEGAS/

[edit] Load SGE module

The following Modules files should be loaded for this package:

 module load VEGAS/VEGAS-0.8