User contributions
From UABgrid Documentation
(Latest | Earliest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)
- 13:03, 28 August 2020 (diff | hist) . . (+861) . . Jupyter (More information on custom building conda environments on cheahea)
- 10:41, 21 April 2020 (diff | hist) . . (+20) . . m UAB Openstack Tutorial (→Create Application Credentials) (top)
- 11:29, 28 February 2020 (diff | hist) . . (+526) . . m UAB Openstack Tutorial (Add info on getting creds)
- 11:17, 28 February 2020 (diff | hist) . . (+3,373) . . N UAB Openstack Tutorial (Initial Page Creation)
- 19:19, 7 February 2020 (diff | hist) . . (+141) . . m Jupyter (→Build your conda environment: How to update)
- 20:33, 6 February 2020 (diff | hist) . . (+12) . . m Jupyter (--no-builds option)
- 21:26, 14 January 2020 (diff | hist) . . (+64) . . Jupyter (→Build your conda environment)
- 21:25, 14 January 2020 (diff | hist) . . (+85) . . Jupyter (→Build your conda environment)
- 21:22, 14 January 2020 (diff | hist) . . (+76) . . N File:JupyterCustomEnv.jpeg (File showing what a custom conda environment looks like in Jupyter On Demand) (top)
- 21:21, 14 January 2020 (diff | hist) . . (+55) . . Jupyter (→Set up your cheaha .condarc file)
- 21:21, 14 January 2020 (diff | hist) . . (+2) . . Jupyter (→Add ipkernel to your conda environment)
- 21:20, 14 January 2020 (diff | hist) . . (+37) . . Jupyter (→Export YAML file containing your environment to cheaha)
- 21:20, 14 January 2020 (diff | hist) . . (+84) . . Jupyter (→Export YAML file containing your environment to cheaha)
- 21:19, 14 January 2020 (diff | hist) . . (+257) . . Jupyter (→Adding Custom Conda Environments to Jupyter)
- 21:17, 14 January 2020 (diff | hist) . . (+667) . . Jupyter (Added Custom Jupyter Conda Environments)
- 20:08, 27 October 2019 (diff | hist) . . (+33) . . Jupyter (→Jupyter On Demand)
- 20:07, 27 October 2019 (diff | hist) . . (+16) . . N File:LaunchJupyter.png (Button to press.) (top)
- 20:02, 27 October 2019 (diff | hist) . . (+43) . . Jupyter (Adding numbering)
- 19:57, 27 October 2019 (diff | hist) . . (+187) . . Jupyter (→Jupyter On Demand)
- 18:05, 27 October 2019 (diff | hist) . . (+60) . . Jupyter (Updated GPU instructions)
- 18:03, 27 October 2019 (diff | hist) . . (+27) . . N File:PascalNodes.png (Arguments for getting a GPU) (top)
- 18:03, 27 October 2019 (diff | hist) . . (+43) . . N File:TestPytorch.png (Shows successful pytorch run on pascalnodes) (top)
- 17:57, 27 October 2019 (diff | hist) . . (+66) . . N File:PascalNodes.pdf (Shows arguments for starting a job using PascaleNodes to get a GPU) (top)
- 17:57, 27 October 2019 (diff | hist) . . (+57) . . N File:TestPytorch.pdf (Shows success test of PyTorch on Jupter Notebook Oct 2019) (top)
- 10:19, 24 October 2019 (diff | hist) . . (+17) . . Jupyter (→Jupyter On Demand)
- 10:17, 24 October 2019 (diff | hist) . . (+104) . . Jupyter (→Jupyter by Proxy: Warning added)
- 10:16, 24 October 2019 (diff | hist) . . (+113) . . m Jupyter (→Jupyter On Demand: Cleanup)
- 10:14, 24 October 2019 (diff | hist) . . (+46) . . Jupyter (→Jupyter On Demand)
- 10:31, 22 October 2019 (diff | hist) . . (0) . . m Jupyter (→Jupyter On Demand)
- 10:26, 22 October 2019 (diff | hist) . . (+1) . . m Jupyter (→Jupyter On Demand)
- 10:15, 22 October 2019 (diff | hist) . . (+9) . . m Jupyter (Updated Anaconda environment)
- 09:31, 17 September 2019 (diff | hist) . . (+57) . . Jupyter (GPU environment description)
- 09:29, 17 September 2019 (diff | hist) . . (+24) . . N File:JupyterNotebookGPUEnvironment.png (Arguments for using GPUs) (top)
- 09:29, 17 September 2019 (diff | hist) . . (+94) . . Jupyter (→Jupyter On Demand)
- 09:24, 17 September 2019 (diff | hist) . . (+168) . . Jupyter (→Jupyter On Demand: Cleanup starting Jupyter)
- 09:15, 17 September 2019 (diff | hist) . . (+44) . . N File:JupyterNotebookStart.png (Image of starting Jupyter Notebook on cheaha) (top)
- 09:13, 17 September 2019 (diff | hist) . . (+172) . . m Jupyter (→Jupyter On Demand: - environment arguments)
- 16:21, 31 August 2019 (diff | hist) . . (+121) . . Jupyter (On Demand added)
- 11:38, 30 January 2019 (diff | hist) . . (+25) . . PheDRS (→NLP Discovered Patients) (top)
- 11:31, 30 January 2019 (diff | hist) . . (+366) . . PheDRS (→Evidence Code Ontology: Updating NLP)
- 11:19, 30 January 2019 (diff | hist) . . (+529) . . PheDRS (→Evidence Code Ontology)
- 10:59, 30 January 2019 (diff | hist) . . (+698) . . PheDRS (→Developer Guide to PheDRS Data Loading Criteria: Updating vocabulary meaning.)
- 14:39, 24 January 2019 (diff | hist) . . (+826) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation: Evidence Codes)
- 14:28, 24 January 2019 (diff | hist) . . (+5) . . m PheDRS (→Installation / Setup: TODO)
- 14:19, 18 January 2019 (diff | hist) . . (-80) . . m PheDRS (→Developer Guide to PheDRS Data Loading Criteria)
- 13:54, 18 January 2019 (diff | hist) . . (+15) . . m PheDRS (→Developer Guide to PheDRS Data Loading Criteria)
- 13:51, 18 January 2019 (diff | hist) . . (-65) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 13:44, 18 January 2019 (diff | hist) . . (-153) . . m PheDRS (→Developer Guide for Registry Configuration Properties)
- 13:38, 18 January 2019 (diff | hist) . . (-84) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 13:33, 18 January 2019 (diff | hist) . . (+6,091) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 13:22, 18 January 2019 (diff | hist) . . (+107) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation)
- 13:19, 18 January 2019 (diff | hist) . . (+708) . . PheDRS (→Registry Configuration: Adding developer guide for registry configuration properties)
- 11:01, 18 January 2019 (diff | hist) . . (+53) . . m PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation)
- 10:57, 18 January 2019 (diff | hist) . . (+401) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation: Documentation Location)
- 10:39, 18 January 2019 (diff | hist) . . (+33) . . PheDRS (→Phenotype Detection Registry System)
- 10:48, 17 January 2019 (diff | hist) . . (+785) . . PheDRS (→Phenotype Detection Registry System: Added roles)
- 16:40, 14 January 2019 (diff | hist) . . (+187) . . PheDRS (Placeholders for Content)
- 15:25, 14 January 2019 (diff | hist) . . (+2,240) . . PheDRS (CVTERM Prop configuration added)
- 13:58, 14 January 2019 (diff | hist) . . (+338) . . N PheDRS (Creation)
- 08:55, 1 November 2018 (diff | hist) . . (-5) . . Jupyter (→3. Copy notebook settings)
- 08:54, 1 November 2018 (diff | hist) . . (+352) . . Jupyter (Detailing steps to starting Jupyter)
- 10:39, 19 October 2018 (diff | hist) . . (+26) . . Jupyter (→DeepNLP option)
- 09:31, 18 October 2018 (diff | hist) . . (+227) . . Jupyter (DeepNLP option)
- 13:55, 11 October 2018 (diff | hist) . . (+205) . . Jupyter (Additional information on Python_Virtual_Environment and Anaconda)
- 14:02, 4 October 2018 (diff | hist) . . (+164) . . Jupyter (Added memory heavy option)
- 17:03, 25 September 2018 (diff | hist) . . (+731) . . N DeepNLP (Create documentation for conda module) (top)
- 10:16, 12 September 2018 (diff | hist) . . (+520) . . Jupyter (Adding GPU info, cleanup)
- 17:06, 4 September 2018 (diff | hist) . . (+71) . . Jupyter (putty port forward link added)
- 15:20, 4 September 2018 (diff | hist) . . (+531) . . Jupyter (Windows instructions for connecting and proxying from cheaha)
- 16:44, 2 September 2018 (diff | hist) . . (+266) . . Jupyter (IO data rate fix)
- 20:19, 1 September 2018 (diff | hist) . . (+17) . . m Jupyter (Typo fix, bolding relevant bits)
- 10:35, 29 August 2018 (diff | hist) . . (+305) . . Jupyter (→Jupyter on Cheaha)
- 10:26, 29 August 2018 (diff | hist) . . (+290) . . Jupyter (→Jupyter on Cheaha)
- 12:28, 22 August 2018 (diff | hist) . . (+68) . . m Slurm (Link to Jupyter Notebook)
- 13:41, 21 August 2018 (diff | hist) . . (+1,028) . . Jupyter (Description of how to run Jupyter Notebook interactively using Anaconda3/5.2.0)
- 15:17, 17 December 2012 (diff | hist) . . (+1,118) . . NgsCctsBuildAbyss (Notes on sucessfull compiling of abyss) (top)
- 08:19, 16 September 2011 (diff | hist) . . (+73) . . Galaxy DNA-Seq Tutorial (→Comparative Genomics) (top)
- 08:17, 16 September 2011 (diff | hist) . . (+36) . . Galaxy DNA-Seq Tutorial (→Difference from consensus)
- 08:16, 16 September 2011 (diff | hist) . . (+13) . . Galaxy DNA-Seq Tutorial (→SNPEff - Variation Summation (optional))
- 08:15, 16 September 2011 (diff | hist) . . (-3) . . Galaxy DNA-Seq Tutorial (→Comparative Genomics)
- 08:14, 16 September 2011 (diff | hist) . . (-3) . . Galaxy DNA-Seq Tutorial (→Difference from consensus)
- 08:14, 16 September 2011 (diff | hist) . . (-2) . . Galaxy DNA-Seq Tutorial (→Pileup Filter)
- 08:14, 16 September 2011 (diff | hist) . . (-2) . . Galaxy DNA-Seq Tutorial (→Finding the Relevant SNPs versus Control)
- 00:46, 16 September 2011 (diff | hist) . . (+125) . . Galaxy DNA-Seq Tutorial (→Pileup Filter)
- 00:45, 16 September 2011 (diff | hist) . . (+10) . . Galaxy DNA-Seq Tutorial (→SNPEff - Variation Summation)
- 00:44, 16 September 2011 (diff | hist) . . (+304) . . Galaxy DNA-Seq Tutorial (→Pileup)
- 00:29, 16 September 2011 (diff | hist) . . (+207) . . Galaxy DNA-Seq Tutorial (→Results from SNPEff)
- 00:26, 16 September 2011 (diff | hist) . . (+88) . . Galaxy DNA-Seq Tutorial
- 00:22, 16 September 2011 (diff | hist) . . (+164) . . Galaxy DNA-Seq Tutorial (→FastQC Results)
- 00:19, 16 September 2011 (diff | hist) . . (+8) . . Galaxy DNA-Seq Tutorial (→FastQC Results)
- 00:17, 16 September 2011 (diff | hist) . . (0) . . N File:Fastqc summary.jpg (top)
- 00:13, 16 September 2011 (diff | hist) . . (+3) . . Galaxy DNA-Seq Tutorial (→Running FastQC)
- 00:12, 16 September 2011 (diff | hist) . . (+154) . . Galaxy DNA-Seq Tutorial (→Metadata - Formatting and Grooming Data)
- 23:55, 15 September 2011 (diff | hist) . . (+194) . . Galaxy DNA-Seq Tutorial (→Trimming Reads)
- 23:49, 15 September 2011 (diff | hist) . . (-7) . . Galaxy DNA-Seq Tutorial (→Quality Control = Formatting and Grooming Data)
- 23:47, 15 September 2011 (diff | hist) . . (+109) . . Galaxy DNA-Seq Tutorial (→Formatting and Grooming Data)
- 21:41, 15 September 2011 (diff | hist) . . (+148) . . Galaxy DNA-Seq Tutorial (→Short read alignment to reference genome using BWA)
- 20:58, 15 September 2011 (diff | hist) . . (+1) . . Galaxy (→Available datasets)
- 20:57, 15 September 2011 (diff | hist) . . (+2) . . Galaxy (→Available datasets)
- 15:53, 15 September 2011 (diff | hist) . . (+351) . . Galaxy DNA-Seq Tutorial
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