User contributions

(Latest | Earliest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)

• 20:08, 27 October 2019 (diff | hist) . . (+33)‎ . . Jupyter ‎ (→‎Jupyter On Demand) (top)
• 20:07, 27 October 2019 (diff | hist) . . (+16)‎ . . N File:LaunchJupyter.png ‎ (Button to press.) (top)
• 20:02, 27 October 2019 (diff | hist) . . (+43)‎ . . Jupyter ‎ (Adding numbering)
• 19:57, 27 October 2019 (diff | hist) . . (+187)‎ . . Jupyter ‎ (→‎Jupyter On Demand)
• 18:05, 27 October 2019 (diff | hist) . . (+60)‎ . . Jupyter ‎ (Updated GPU instructions)
• 18:03, 27 October 2019 (diff | hist) . . (+27)‎ . . N File:PascalNodes.png ‎ (Arguments for getting a GPU) (top)
• 18:03, 27 October 2019 (diff | hist) . . (+43)‎ . . N File:TestPytorch.png ‎ (Shows successful pytorch run on pascalnodes) (top)
• 17:57, 27 October 2019 (diff | hist) . . (+66)‎ . . N File:PascalNodes.pdf ‎ (Shows arguments for starting a job using PascaleNodes to get a GPU) (top)
• 17:57, 27 October 2019 (diff | hist) . . (+57)‎ . . N File:TestPytorch.pdf ‎ (Shows success test of PyTorch on Jupter Notebook Oct 2019) (top)
• 10:19, 24 October 2019 (diff | hist) . . (+17)‎ . . Jupyter ‎ (→‎Jupyter On Demand)
• 10:17, 24 October 2019 (diff | hist) . . (+104)‎ . . Jupyter ‎ (→‎Jupyter by Proxy: Warning added)
• 10:16, 24 October 2019 (diff | hist) . . (+113)‎ . . m Jupyter ‎ (→‎Jupyter On Demand: Cleanup)
• 10:14, 24 October 2019 (diff | hist) . . (+46)‎ . . Jupyter ‎ (→‎Jupyter On Demand)
• 10:31, 22 October 2019 (diff | hist) . . (0)‎ . . m Jupyter ‎ (→‎Jupyter On Demand)
• 10:26, 22 October 2019 (diff | hist) . . (+1)‎ . . m Jupyter ‎ (→‎Jupyter On Demand)
• 10:15, 22 October 2019 (diff | hist) . . (+9)‎ . . m Jupyter ‎ (Updated Anaconda environment)
• 09:31, 17 September 2019 (diff | hist) . . (+57)‎ . . Jupyter ‎ (GPU environment description)
• 09:29, 17 September 2019 (diff | hist) . . (+24)‎ . . N File:JupyterNotebookGPUEnvironment.png ‎ (Arguments for using GPUs) (top)
• 09:29, 17 September 2019 (diff | hist) . . (+94)‎ . . Jupyter ‎ (→‎Jupyter On Demand)
• 09:24, 17 September 2019 (diff | hist) . . (+168)‎ . . Jupyter ‎ (→‎Jupyter On Demand: Cleanup starting Jupyter)
• 09:15, 17 September 2019 (diff | hist) . . (+44)‎ . . N File:JupyterNotebookStart.png ‎ (Image of starting Jupyter Notebook on cheaha) (top)
• 09:13, 17 September 2019 (diff | hist) . . (+172)‎ . . m Jupyter ‎ (→‎Jupyter On Demand: - environment arguments)
• 16:21, 31 August 2019 (diff | hist) . . (+121)‎ . . Jupyter ‎ (On Demand added)
• 11:38, 30 January 2019 (diff | hist) . . (+25)‎ . . PheDRS ‎ (→‎NLP Discovered Patients) (top)
• 11:31, 30 January 2019 (diff | hist) . . (+366)‎ . . PheDRS ‎ (→‎Evidence Code Ontology: Updating NLP)
• 11:19, 30 January 2019 (diff | hist) . . (+529)‎ . . PheDRS ‎ (→‎Evidence Code Ontology)
• 10:59, 30 January 2019 (diff | hist) . . (+698)‎ . . PheDRS ‎ (→‎Developer Guide to PheDRS Data Loading Criteria: Updating vocabulary meaning.)
• 14:39, 24 January 2019 (diff | hist) . . (+826)‎ . . PheDRS ‎ (→‎Phenotype Detection Registry System (PheDRS) User Documentation: Evidence Codes)
• 14:28, 24 January 2019 (diff | hist) . . (+5)‎ . . m PheDRS ‎ (→‎Installation / Setup: TODO)
• 14:19, 18 January 2019 (diff | hist) . . (-80)‎ . . m PheDRS ‎ (→‎Developer Guide to PheDRS Data Loading Criteria)
• 13:54, 18 January 2019 (diff | hist) . . (+15)‎ . . m PheDRS ‎ (→‎Developer Guide to PheDRS Data Loading Criteria)
• 13:51, 18 January 2019 (diff | hist) . . (-65)‎ . . PheDRS ‎ (→‎Developer Guide for Registry Configuration Properties)
• 13:44, 18 January 2019 (diff | hist) . . (-153)‎ . . m PheDRS ‎ (→‎Developer Guide for Registry Configuration Properties)
• 13:38, 18 January 2019 (diff | hist) . . (-84)‎ . . PheDRS ‎ (→‎Developer Guide for Registry Configuration Properties)
• 13:33, 18 January 2019 (diff | hist) . . (+6,091)‎ . . PheDRS ‎ (→‎Developer Guide for Registry Configuration Properties)
• 13:22, 18 January 2019 (diff | hist) . . (+107)‎ . . PheDRS ‎ (→‎Phenotype Detection Registry System (PheDRS) User Documentation)
• 13:19, 18 January 2019 (diff | hist) . . (+708)‎ . . PheDRS ‎ (→‎Registry Configuration: Adding developer guide for registry configuration properties)
• 11:01, 18 January 2019 (diff | hist) . . (+53)‎ . . m PheDRS ‎ (→‎Phenotype Detection Registry System (PheDRS) User Documentation)
• 10:57, 18 January 2019 (diff | hist) . . (+401)‎ . . PheDRS ‎ (→‎Phenotype Detection Registry System (PheDRS) User Documentation: Documentation Location)
• 10:39, 18 January 2019 (diff | hist) . . (+33)‎ . . PheDRS ‎ (→‎Phenotype Detection Registry System)
• 10:48, 17 January 2019 (diff | hist) . . (+785)‎ . . PheDRS ‎ (→‎Phenotype Detection Registry System: Added roles)
• 16:40, 14 January 2019 (diff | hist) . . (+187)‎ . . PheDRS ‎ (Placeholders for Content)
• 15:25, 14 January 2019 (diff | hist) . . (+2,240)‎ . . PheDRS ‎ (CVTERM Prop configuration added)
• 13:58, 14 January 2019 (diff | hist) . . (+338)‎ . . N PheDRS ‎ (Creation)
• 08:55, 1 November 2018 (diff | hist) . . (-5)‎ . . Jupyter ‎ (→‎3. Copy notebook settings)
• 08:54, 1 November 2018 (diff | hist) . . (+352)‎ . . Jupyter ‎ (Detailing steps to starting Jupyter)
• 10:39, 19 October 2018 (diff | hist) . . (+26)‎ . . Jupyter ‎ (→‎DeepNLP option)
• 09:31, 18 October 2018 (diff | hist) . . (+227)‎ . . Jupyter ‎ (DeepNLP option)
• 13:55, 11 October 2018 (diff | hist) . . (+205)‎ . . Jupyter ‎ (Additional information on Python_Virtual_Environment and Anaconda)
• 14:02, 4 October 2018 (diff | hist) . . (+164)‎ . . Jupyter ‎ (Added memory heavy option)
• 17:03, 25 September 2018 (diff | hist) . . (+731)‎ . . N DeepNLP ‎ (Create documentation for conda module) (top)
• 10:16, 12 September 2018 (diff | hist) . . (+520)‎ . . Jupyter ‎ (Adding GPU info, cleanup)
• 17:06, 4 September 2018 (diff | hist) . . (+71)‎ . . Jupyter ‎ (putty port forward link added)
• 15:20, 4 September 2018 (diff | hist) . . (+531)‎ . . Jupyter ‎ (Windows instructions for connecting and proxying from cheaha)
• 16:44, 2 September 2018 (diff | hist) . . (+266)‎ . . Jupyter ‎ (IO data rate fix)
• 20:19, 1 September 2018 (diff | hist) . . (+17)‎ . . m Jupyter ‎ (Typo fix, bolding relevant bits)
• 10:35, 29 August 2018 (diff | hist) . . (+305)‎ . . Jupyter ‎ (→‎Jupyter on Cheaha)
• 10:26, 29 August 2018 (diff | hist) . . (+290)‎ . . Jupyter ‎ (→‎Jupyter on Cheaha)
• 12:28, 22 August 2018 (diff | hist) . . (+68)‎ . . m Slurm ‎ (Link to Jupyter Notebook) (top)
• 13:41, 21 August 2018 (diff | hist) . . (+1,028)‎ . . Jupyter ‎ (Description of how to run Jupyter Notebook interactively using Anaconda3/5.2.0)
• 15:17, 17 December 2012 (diff | hist) . . (+1,118)‎ . . NgsCctsBuildAbyss ‎ (Notes on sucessfull compiling of abyss) (top)
• 08:19, 16 September 2011 (diff | hist) . . (+73)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Comparative Genomics) (top)
• 08:17, 16 September 2011 (diff | hist) . . (+36)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Difference from consensus)
• 08:16, 16 September 2011 (diff | hist) . . (+13)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎SNPEff - Variation Summation (optional))
• 08:15, 16 September 2011 (diff | hist) . . (-3)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Comparative Genomics)
• 08:14, 16 September 2011 (diff | hist) . . (-3)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Difference from consensus)
• 08:14, 16 September 2011 (diff | hist) . . (-2)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup Filter)
• 08:14, 16 September 2011 (diff | hist) . . (-2)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Finding the Relevant SNPs versus Control)
• 00:46, 16 September 2011 (diff | hist) . . (+125)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup Filter)
• 00:45, 16 September 2011 (diff | hist) . . (+10)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎SNPEff - Variation Summation)
• 00:44, 16 September 2011 (diff | hist) . . (+304)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup)
• 00:29, 16 September 2011 (diff | hist) . . (+207)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Results from SNPEff)
• 00:26, 16 September 2011 (diff | hist) . . (+88)‎ . . Galaxy DNA-Seq Tutorial ‎
• 00:22, 16 September 2011 (diff | hist) . . (+164)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎FastQC Results)
• 00:19, 16 September 2011 (diff | hist) . . (+8)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎FastQC Results)
• 00:17, 16 September 2011 (diff | hist) . . (0)‎ . . N File:Fastqc summary.jpg ‎ (top)
• 00:13, 16 September 2011 (diff | hist) . . (+3)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Running FastQC)
• 00:12, 16 September 2011 (diff | hist) . . (+154)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Metadata - Formatting and Grooming Data)
• 23:55, 15 September 2011 (diff | hist) . . (+194)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Trimming Reads)
• 23:49, 15 September 2011 (diff | hist) . . (-7)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Quality Control = Formatting and Grooming Data)
• 23:47, 15 September 2011 (diff | hist) . . (+109)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Formatting and Grooming Data)
• 21:41, 15 September 2011 (diff | hist) . . (+148)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Short read alignment to reference genome using BWA)
• 20:58, 15 September 2011 (diff | hist) . . (+1)‎ . . Galaxy ‎ (→‎Available datasets)
• 20:57, 15 September 2011 (diff | hist) . . (+2)‎ . . Galaxy ‎ (→‎Available datasets)
• 15:53, 15 September 2011 (diff | hist) . . (+351)‎ . . Galaxy DNA-Seq Tutorial ‎
• 15:50, 15 September 2011 (diff | hist) . . (0)‎ . . N File:SNPEffResultTabular.jpg ‎ (top)
• 15:43, 15 September 2011 (diff | hist) . . (+534)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Difference from consensus)
• 15:36, 15 September 2011 (diff | hist) . . (0)‎ . . N File:CMV21950RvsVACWR CompareData.jpg ‎ (top)
• 15:31, 15 September 2011 (diff | hist) . . (+472)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Locating Relevant SNPs versus Control)
• 15:18, 15 September 2011 (diff | hist) . . (+83)‎ . . Galaxy DNA-Seq Tutorial ‎
• 15:15, 15 September 2011 (diff | hist) . . (+13)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Linking to data)
• 15:14, 15 September 2011 (diff | hist) . . (+41)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup)
• 15:14, 15 September 2011 (diff | hist) . . (0)‎ . . N File:GalaxyTutorialSharedLibrary.jpg ‎ (top)
• 15:13, 15 September 2011 (diff | hist) . . (+209)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup)
• 14:56, 15 September 2011 (diff | hist) . . (+26)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Pileup)
• 14:56, 15 September 2011 (diff | hist) . . (+44)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎BAM Conversion)
• 14:54, 15 September 2011 (diff | hist) . . (+573)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎BAM Conversion)
• 14:44, 15 September 2011 (diff | hist) . . (+285)‎ . . Galaxy DNA-Seq Tutorial ‎
• 14:32, 15 September 2011 (diff | hist) . . (+106)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Other Variant Detection Approaches)
• 14:28, 15 September 2011 (diff | hist) . . (-2)‎ . . Galaxy DNA-Seq Tutorial ‎ (→‎Samtools)

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