User contributions
From UABgrid Documentation
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- 14:03, 28 August 2020 (diff | hist) . . (+861) . . Jupyter (More information on custom building conda environments on cheahea)
- 11:41, 21 April 2020 (diff | hist) . . (+20) . . m UAB Openstack Tutorial (→Create Application Credentials) (top)
- 12:29, 28 February 2020 (diff | hist) . . (+526) . . m UAB Openstack Tutorial (Add info on getting creds)
- 12:17, 28 February 2020 (diff | hist) . . (+3,373) . . N UAB Openstack Tutorial (Initial Page Creation)
- 20:19, 7 February 2020 (diff | hist) . . (+141) . . m Jupyter (→Build your conda environment: How to update)
- 21:33, 6 February 2020 (diff | hist) . . (+12) . . m Jupyter (--no-builds option)
- 22:26, 14 January 2020 (diff | hist) . . (+64) . . Jupyter (→Build your conda environment)
- 22:25, 14 January 2020 (diff | hist) . . (+85) . . Jupyter (→Build your conda environment)
- 22:22, 14 January 2020 (diff | hist) . . (+76) . . N File:JupyterCustomEnv.jpeg (File showing what a custom conda environment looks like in Jupyter On Demand) (top)
- 22:21, 14 January 2020 (diff | hist) . . (+55) . . Jupyter (→Set up your cheaha .condarc file)
- 22:21, 14 January 2020 (diff | hist) . . (+2) . . Jupyter (→Add ipkernel to your conda environment)
- 22:20, 14 January 2020 (diff | hist) . . (+37) . . Jupyter (→Export YAML file containing your environment to cheaha)
- 22:20, 14 January 2020 (diff | hist) . . (+84) . . Jupyter (→Export YAML file containing your environment to cheaha)
- 22:19, 14 January 2020 (diff | hist) . . (+257) . . Jupyter (→Adding Custom Conda Environments to Jupyter)
- 22:17, 14 January 2020 (diff | hist) . . (+667) . . Jupyter (Added Custom Jupyter Conda Environments)
- 21:08, 27 October 2019 (diff | hist) . . (+33) . . Jupyter (→Jupyter On Demand)
- 21:07, 27 October 2019 (diff | hist) . . (+16) . . N File:LaunchJupyter.png (Button to press.) (top)
- 21:02, 27 October 2019 (diff | hist) . . (+43) . . Jupyter (Adding numbering)
- 20:57, 27 October 2019 (diff | hist) . . (+187) . . Jupyter (→Jupyter On Demand)
- 19:05, 27 October 2019 (diff | hist) . . (+60) . . Jupyter (Updated GPU instructions)
- 19:03, 27 October 2019 (diff | hist) . . (+27) . . N File:PascalNodes.png (Arguments for getting a GPU) (top)
- 19:03, 27 October 2019 (diff | hist) . . (+43) . . N File:TestPytorch.png (Shows successful pytorch run on pascalnodes) (top)
- 18:57, 27 October 2019 (diff | hist) . . (+66) . . N File:PascalNodes.pdf (Shows arguments for starting a job using PascaleNodes to get a GPU) (top)
- 18:57, 27 October 2019 (diff | hist) . . (+57) . . N File:TestPytorch.pdf (Shows success test of PyTorch on Jupter Notebook Oct 2019) (top)
- 11:19, 24 October 2019 (diff | hist) . . (+17) . . Jupyter (→Jupyter On Demand)
- 11:17, 24 October 2019 (diff | hist) . . (+104) . . Jupyter (→Jupyter by Proxy: Warning added)
- 11:16, 24 October 2019 (diff | hist) . . (+113) . . m Jupyter (→Jupyter On Demand: Cleanup)
- 11:14, 24 October 2019 (diff | hist) . . (+46) . . Jupyter (→Jupyter On Demand)
- 11:31, 22 October 2019 (diff | hist) . . (0) . . m Jupyter (→Jupyter On Demand)
- 11:26, 22 October 2019 (diff | hist) . . (+1) . . m Jupyter (→Jupyter On Demand)
- 11:15, 22 October 2019 (diff | hist) . . (+9) . . m Jupyter (Updated Anaconda environment)
- 10:31, 17 September 2019 (diff | hist) . . (+57) . . Jupyter (GPU environment description)
- 10:29, 17 September 2019 (diff | hist) . . (+24) . . N File:JupyterNotebookGPUEnvironment.png (Arguments for using GPUs) (top)
- 10:29, 17 September 2019 (diff | hist) . . (+94) . . Jupyter (→Jupyter On Demand)
- 10:24, 17 September 2019 (diff | hist) . . (+168) . . Jupyter (→Jupyter On Demand: Cleanup starting Jupyter)
- 10:15, 17 September 2019 (diff | hist) . . (+44) . . N File:JupyterNotebookStart.png (Image of starting Jupyter Notebook on cheaha) (top)
- 10:13, 17 September 2019 (diff | hist) . . (+172) . . m Jupyter (→Jupyter On Demand: - environment arguments)
- 17:21, 31 August 2019 (diff | hist) . . (+121) . . Jupyter (On Demand added)
- 12:38, 30 January 2019 (diff | hist) . . (+25) . . PheDRS (→NLP Discovered Patients) (top)
- 12:31, 30 January 2019 (diff | hist) . . (+366) . . PheDRS (→Evidence Code Ontology: Updating NLP)
- 12:19, 30 January 2019 (diff | hist) . . (+529) . . PheDRS (→Evidence Code Ontology)
- 11:59, 30 January 2019 (diff | hist) . . (+698) . . PheDRS (→Developer Guide to PheDRS Data Loading Criteria: Updating vocabulary meaning.)
- 15:39, 24 January 2019 (diff | hist) . . (+826) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation: Evidence Codes)
- 15:28, 24 January 2019 (diff | hist) . . (+5) . . m PheDRS (→Installation / Setup: TODO)
- 15:19, 18 January 2019 (diff | hist) . . (-80) . . m PheDRS (→Developer Guide to PheDRS Data Loading Criteria)
- 14:54, 18 January 2019 (diff | hist) . . (+15) . . m PheDRS (→Developer Guide to PheDRS Data Loading Criteria)
- 14:51, 18 January 2019 (diff | hist) . . (-65) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 14:44, 18 January 2019 (diff | hist) . . (-153) . . m PheDRS (→Developer Guide for Registry Configuration Properties)
- 14:38, 18 January 2019 (diff | hist) . . (-84) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 14:33, 18 January 2019 (diff | hist) . . (+6,091) . . PheDRS (→Developer Guide for Registry Configuration Properties)
- 14:22, 18 January 2019 (diff | hist) . . (+107) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation)
- 14:19, 18 January 2019 (diff | hist) . . (+708) . . PheDRS (→Registry Configuration: Adding developer guide for registry configuration properties)
- 12:01, 18 January 2019 (diff | hist) . . (+53) . . m PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation)
- 11:57, 18 January 2019 (diff | hist) . . (+401) . . PheDRS (→Phenotype Detection Registry System (PheDRS) User Documentation: Documentation Location)
- 11:39, 18 January 2019 (diff | hist) . . (+33) . . PheDRS (→Phenotype Detection Registry System)
- 11:48, 17 January 2019 (diff | hist) . . (+785) . . PheDRS (→Phenotype Detection Registry System: Added roles)
- 17:40, 14 January 2019 (diff | hist) . . (+187) . . PheDRS (Placeholders for Content)
- 16:25, 14 January 2019 (diff | hist) . . (+2,240) . . PheDRS (CVTERM Prop configuration added)
- 14:58, 14 January 2019 (diff | hist) . . (+338) . . N PheDRS (Creation)
- 09:55, 1 November 2018 (diff | hist) . . (-5) . . Jupyter (→3. Copy notebook settings)
- 09:54, 1 November 2018 (diff | hist) . . (+352) . . Jupyter (Detailing steps to starting Jupyter)
- 11:39, 19 October 2018 (diff | hist) . . (+26) . . Jupyter (→DeepNLP option)
- 10:31, 18 October 2018 (diff | hist) . . (+227) . . Jupyter (DeepNLP option)
- 14:55, 11 October 2018 (diff | hist) . . (+205) . . Jupyter (Additional information on Python_Virtual_Environment and Anaconda)
- 15:02, 4 October 2018 (diff | hist) . . (+164) . . Jupyter (Added memory heavy option)
- 18:03, 25 September 2018 (diff | hist) . . (+731) . . N DeepNLP (Create documentation for conda module)
- 11:16, 12 September 2018 (diff | hist) . . (+520) . . Jupyter (Adding GPU info, cleanup)
- 18:06, 4 September 2018 (diff | hist) . . (+71) . . Jupyter (putty port forward link added)
- 16:20, 4 September 2018 (diff | hist) . . (+531) . . Jupyter (Windows instructions for connecting and proxying from cheaha)
- 17:44, 2 September 2018 (diff | hist) . . (+266) . . Jupyter (IO data rate fix)
- 21:19, 1 September 2018 (diff | hist) . . (+17) . . m Jupyter (Typo fix, bolding relevant bits)
- 11:35, 29 August 2018 (diff | hist) . . (+305) . . Jupyter (→Jupyter on Cheaha)
- 11:26, 29 August 2018 (diff | hist) . . (+290) . . Jupyter (→Jupyter on Cheaha)
- 13:28, 22 August 2018 (diff | hist) . . (+68) . . m Slurm (Link to Jupyter Notebook)
- 14:41, 21 August 2018 (diff | hist) . . (+1,028) . . Jupyter (Description of how to run Jupyter Notebook interactively using Anaconda3/5.2.0)
- 16:17, 17 December 2012 (diff | hist) . . (+1,118) . . NgsCctsBuildAbyss (Notes on sucessfull compiling of abyss) (top)
- 09:19, 16 September 2011 (diff | hist) . . (+73) . . Galaxy DNA-Seq Tutorial (→Comparative Genomics) (top)
- 09:17, 16 September 2011 (diff | hist) . . (+36) . . Galaxy DNA-Seq Tutorial (→Difference from consensus)
- 09:16, 16 September 2011 (diff | hist) . . (+13) . . Galaxy DNA-Seq Tutorial (→SNPEff - Variation Summation (optional))
- 09:15, 16 September 2011 (diff | hist) . . (-3) . . Galaxy DNA-Seq Tutorial (→Comparative Genomics)
- 09:14, 16 September 2011 (diff | hist) . . (-3) . . Galaxy DNA-Seq Tutorial (→Difference from consensus)
- 09:14, 16 September 2011 (diff | hist) . . (-2) . . Galaxy DNA-Seq Tutorial (→Pileup Filter)
- 09:14, 16 September 2011 (diff | hist) . . (-2) . . Galaxy DNA-Seq Tutorial (→Finding the Relevant SNPs versus Control)
- 01:46, 16 September 2011 (diff | hist) . . (+125) . . Galaxy DNA-Seq Tutorial (→Pileup Filter)
- 01:45, 16 September 2011 (diff | hist) . . (+10) . . Galaxy DNA-Seq Tutorial (→SNPEff - Variation Summation)
- 01:44, 16 September 2011 (diff | hist) . . (+304) . . Galaxy DNA-Seq Tutorial (→Pileup)
- 01:29, 16 September 2011 (diff | hist) . . (+207) . . Galaxy DNA-Seq Tutorial (→Results from SNPEff)
- 01:26, 16 September 2011 (diff | hist) . . (+88) . . Galaxy DNA-Seq Tutorial
- 01:22, 16 September 2011 (diff | hist) . . (+164) . . Galaxy DNA-Seq Tutorial (→FastQC Results)
- 01:19, 16 September 2011 (diff | hist) . . (+8) . . Galaxy DNA-Seq Tutorial (→FastQC Results)
- 01:17, 16 September 2011 (diff | hist) . . (0) . . N File:Fastqc summary.jpg (top)
- 01:13, 16 September 2011 (diff | hist) . . (+3) . . Galaxy DNA-Seq Tutorial (→Running FastQC)
- 01:12, 16 September 2011 (diff | hist) . . (+154) . . Galaxy DNA-Seq Tutorial (→Metadata - Formatting and Grooming Data)
- 00:55, 16 September 2011 (diff | hist) . . (+194) . . Galaxy DNA-Seq Tutorial (→Trimming Reads)
- 00:49, 16 September 2011 (diff | hist) . . (-7) . . Galaxy DNA-Seq Tutorial (→Quality Control = Formatting and Grooming Data)
- 00:47, 16 September 2011 (diff | hist) . . (+109) . . Galaxy DNA-Seq Tutorial (→Formatting and Grooming Data)
- 22:41, 15 September 2011 (diff | hist) . . (+148) . . Galaxy DNA-Seq Tutorial (→Short read alignment to reference genome using BWA)
- 21:58, 15 September 2011 (diff | hist) . . (+1) . . Galaxy (→Available datasets)
- 21:57, 15 September 2011 (diff | hist) . . (+2) . . Galaxy (→Available datasets)
- 16:53, 15 September 2011 (diff | hist) . . (+351) . . Galaxy DNA-Seq Tutorial
- 16:50, 15 September 2011 (diff | hist) . . (0) . . N File:SNPEffResultTabular.jpg (top)
- 16:43, 15 September 2011 (diff | hist) . . (+534) . . Galaxy DNA-Seq Tutorial (→Difference from consensus)
- 16:36, 15 September 2011 (diff | hist) . . (0) . . N File:CMV21950RvsVACWR CompareData.jpg (top)
- 16:31, 15 September 2011 (diff | hist) . . (+472) . . Galaxy DNA-Seq Tutorial (→Locating Relevant SNPs versus Control)
- 16:18, 15 September 2011 (diff | hist) . . (+83) . . Galaxy DNA-Seq Tutorial
- 16:15, 15 September 2011 (diff | hist) . . (+13) . . Galaxy DNA-Seq Tutorial (→Linking to data)
- 16:14, 15 September 2011 (diff | hist) . . (+41) . . Galaxy DNA-Seq Tutorial (→Pileup)
- 16:14, 15 September 2011 (diff | hist) . . (0) . . N File:GalaxyTutorialSharedLibrary.jpg (top)
- 16:13, 15 September 2011 (diff | hist) . . (+209) . . Galaxy DNA-Seq Tutorial (→Pileup)
- 15:56, 15 September 2011 (diff | hist) . . (+26) . . Galaxy DNA-Seq Tutorial (→Pileup)
- 15:56, 15 September 2011 (diff | hist) . . (+44) . . Galaxy DNA-Seq Tutorial (→BAM Conversion)
- 15:54, 15 September 2011 (diff | hist) . . (+573) . . Galaxy DNA-Seq Tutorial (→BAM Conversion)
- 15:44, 15 September 2011 (diff | hist) . . (+285) . . Galaxy DNA-Seq Tutorial
- 15:32, 15 September 2011 (diff | hist) . . (+106) . . Galaxy DNA-Seq Tutorial (→Other Variant Detection Approaches)
- 15:28, 15 September 2011 (diff | hist) . . (-2) . . Galaxy DNA-Seq Tutorial (→Samtools)
- 15:28, 15 September 2011 (diff | hist) . . (+116) . . Galaxy DNA-Seq Tutorial (→Variant Analysis)
- 15:09, 15 September 2011 (diff | hist) . . (+75) . . Galaxy DNA-Seq Tutorial
- 15:06, 15 September 2011 (diff | hist) . . (+16) . . N File:SamBamFileFormatFlags.jpg (SAM format flags) (top)
- 15:02, 15 September 2011 (diff | hist) . . (+45) . . Galaxy DNA-Seq Tutorial
- 14:56, 15 September 2011 (diff | hist) . . (+153) . . Galaxy DNA-Seq Tutorial (→BAM Conversion)
- 14:51, 15 September 2011 (diff | hist) . . (+237) . . Galaxy DNA-Seq Tutorial (→Short read alignment to reference genome using BWA)
- 14:46, 15 September 2011 (diff | hist) . . (+152) . . Galaxy DNA-Seq Tutorial (→Results)
- 14:43, 15 September 2011 (diff | hist) . . (+262) . . Galaxy DNA-Seq Tutorial (→Performing cleanup)
- 14:40, 15 September 2011 (diff | hist) . . (+32) . . N File:FastQTrimmerRun.jpg (CMV 21950R being trimmed from 3') (top)
- 14:31, 15 September 2011 (diff | hist) . . (+226) . . Galaxy DNA-Seq Tutorial
- 14:27, 15 September 2011 (diff | hist) . . (+88) . . Galaxy DNA-Seq Tutorial (→Quality Statistics and Boxplot)
- 14:25, 15 September 2011 (diff | hist) . . (0) . . File:DrawQualityScoreBoxplot.jpg (uploaded a new version of "File:DrawQualityScoreBoxplot.jpg": Run box plot) (top)
- 14:22, 15 September 2011 (diff | hist) . . (+35) . . Galaxy DNA-Seq Tutorial (→Quality Statistics and Boxplot)
- 14:21, 15 September 2011 (diff | hist) . . (0) . . N File:QualityStatsResults.jpg (top)
- 14:18, 15 September 2011 (diff | hist) . . (-10) . . Galaxy DNA-Seq Tutorial (→Quality Statistics and Boxplot)
- 14:17, 15 September 2011 (diff | hist) . . (0) . . N File:RunComputeQualityStats.jpg (top)
- 14:14, 15 September 2011 (diff | hist) . . (+30) . . Galaxy DNA-Seq Tutorial
- 14:11, 15 September 2011 (diff | hist) . . (+98) . . Galaxy DNA-Seq Tutorial (→Reference Genome)
- 14:09, 15 September 2011 (diff | hist) . . (+114) . . Galaxy DNA-Seq Tutorial
- 14:04, 15 September 2011 (diff | hist) . . (+465) . . Galaxy DNA-Seq Tutorial (FastQC and Compute stats cleanup)
- 13:47, 15 September 2011 (diff | hist) . . (0) . . N File:FastQCRunSettings.jpg (top)
- 13:39, 15 September 2011 (diff | hist) . . (+127) . . Galaxy DNA-Seq Tutorial
- 13:32, 15 September 2011 (diff | hist) . . (+115) . . Galaxy DNA-Seq Tutorial (→Reference Genome)
- 13:30, 15 September 2011 (diff | hist) . . (+217) . . Galaxy (→Available datasets: Added new datasets)
- 13:21, 15 September 2011 (diff | hist) . . (+368) . . Galaxy DNA-Seq Tutorial
- 13:09, 15 September 2011 (diff | hist) . . (+66) . . Galaxy DNA-Seq Tutorial (→Linking to data)
- 13:08, 15 September 2011 (diff | hist) . . (0) . . N File:DataLibraryVacWRFastQ.jpg (top)
- 10:56, 15 September 2011 (diff | hist) . . (+38) . . Galaxy DNA-Seq Tutorial (Pileup filtering)
- 10:55, 15 September 2011 (diff | hist) . . (+35) . . N File:PileupFiltering100Reads.jpg (Pileup run settings for Vaccinia WR) (top)
- 00:13, 15 September 2011 (diff | hist) . . (+75) . . Galaxy DNA-Seq Tutorial (Filtering SNPs)
- 00:11, 15 September 2011 (diff | hist) . . (+50) . . N File:FilterRunVacWR.jpg (How to filter a SAM file for SNPs versus reference) (top)
- 23:22, 14 September 2011 (diff | hist) . . (+32) . . Galaxy DNA-Seq Tutorial
- 23:21, 14 September 2011 (diff | hist) . . (+27) . . N File:SNPEffResults.jpg (SNP Results for Vaccinia WR) (top)
- 23:20, 14 September 2011 (diff | hist) . . (+141) . . Galaxy DNA-Seq Tutorial
- 23:18, 14 September 2011 (diff | hist) . . (+17) . . N File:SNPEffCoverage.jpg (For a vaccinia WR) (top)
- 23:17, 14 September 2011 (diff | hist) . . (+214) . . Galaxy DNA-Seq Tutorial (SNPEff separate section)
- 22:47, 14 September 2011 (diff | hist) . . (+78) . . Galaxy DNA-Seq Tutorial (→Variant Analysis)
- 22:45, 14 September 2011 (diff | hist) . . (+19) . . N File:SNPEff.jpg (SNPEff run settings) (top)
- 22:38, 14 September 2011 (diff | hist) . . (+127) . . Galaxy DNA-Seq Tutorial (→BAM Conversion)
- 22:34, 14 September 2011 (diff | hist) . . (+153) . . Galaxy DNA-Seq Tutorial (→Variant Analysis)
- 22:09, 14 September 2011 (diff | hist) . . (+107) . . Galaxy DNA-Seq Tutorial (→Variant Analysis)
- 22:08, 14 September 2011 (diff | hist) . . (+44) . . N File:GeneratePileup.jpg (Generate pileup for Vaccinia, call consensus) (top)
- 22:06, 14 September 2011 (diff | hist) . . (+20) . . Galaxy DNA-Seq Tutorial (→Looking at differences with SNPEff)
- 17:36, 14 September 2011 (diff | hist) . . (+22) . . Galaxy DNA-Seq Tutorial (Flagstat)
- 17:35, 14 September 2011 (diff | hist) . . (+29) . . N File:Sam2bam.jpg (Conversion of SAM file to BAM) (top)
- 17:35, 14 September 2011 (diff | hist) . . (+44) . . Galaxy DNA-Seq Tutorial (Flagstat)
- 17:35, 14 September 2011 (diff | hist) . . (+22) . . N File:Flagstat.jpg (Flag stat on BAM files) (top)
- 16:53, 14 September 2011 (diff | hist) . . (-1) . . Galaxy DNA-Seq Tutorial (→Short read alignment to reference genome using BWA)
- 16:52, 14 September 2011 (diff | hist) . . (+26) . . N File:Bwa run cmv 227r.jpg (BWA run of VAC WR CMV 227R) (top)
- 16:33, 14 September 2011 (diff | hist) . . (+31) . . Galaxy DNA-Seq Tutorial (→Short read alignment to reference genome using BWA)
- 16:33, 14 September 2011 (diff | hist) . . (+39) . . N File:Bwa run cmv 21950r.jpg (Running BWA on CMV 21950R in UAB Galaxy) (top)
- 16:08, 14 September 2011 (diff | hist) . . (0) . . File:Cmv21950r 3 1 original boxplot.jpg (uploaded a new version of "File:Cmv21950r 3 1 original boxplot.jpg") (top)
- 16:05, 14 September 2011 (diff | hist) . . (+38) . . Galaxy DNA-Seq Tutorial (→Assessing the quality of the data)
- 16:04, 14 September 2011 (diff | hist) . . (0) . . N File:DrawQualityScoreBoxplot.jpg
- 15:59, 14 September 2011 (diff | hist) . . (+44) . . Galaxy DNA-Seq Tutorial (→Performing cleanup)
- 15:58, 14 September 2011 (diff | hist) . . (+47) . . N File:Cmv21950r 3 1 trimmed boxplot.jpg (CMV 21950R after trimming one base off the end.) (top)
- 15:33, 14 September 2011 (diff | hist) . . (+43) . . Galaxy DNA-Seq Tutorial (Adding pre-trim boxplot)
- 15:32, 14 September 2011 (diff | hist) . . (+49) . . N File:Cmv21950r 3 1 original boxplot.jpg (Original boxplot before trimming of Vac WR 21950R)
- 15:27, 14 September 2011 (diff | hist) . . (+49) . . Galaxy DNA-Seq Tutorial (Adding computation of qualitys stats)
- 15:25, 14 September 2011 (diff | hist) . . (+45) . . N File:ComputeQualityStatsCMV21950R 3 1.jpg (Image of running computation of quality stats) (top)
- 17:34, 13 September 2011 (diff | hist) . . (+212) . . Galaxy DNA-Seq Tutorial (→Assessing the quality of the data)
- 17:31, 13 September 2011 (diff | hist) . . (+48) . . N File:CMV VAC WR 3 2 base quality.jpg (CMV_VAC_WR_3_2 box and whiskers plot from FastQC) (top)
- 17:30, 13 September 2011 (diff | hist) . . (+396) . . Galaxy DNA-Seq Tutorial (→Assessing the quality of the data)
- 16:46, 13 September 2011 (diff | hist) . . (+619) . . Galaxy DNA-Seq Tutorial (Formatting data)
- 16:31, 13 September 2011 (diff | hist) . . (+70) . . N File:DataType.jpg (Data attributes for a vaccinia virus fastq file from the history pane.) (top)
- 16:29, 13 September 2011 (diff | hist) . . (+362) . . Galaxy DNA-Seq Tutorial (→Linking to data)
- 16:26, 13 September 2011 (diff | hist) . . (+66) . . N File:HistoryPane.jpg (What your history pane should look like after linking in the data.) (top)
- 14:34, 13 September 2011 (diff | hist) . . (+437) . . Galaxy DNA-Seq Tutorial (Linking in WR data)
- 14:05, 13 September 2011 (diff | hist) . . (+219) . . UAB Galaxy Workshop Tutorial
- 14:01, 13 September 2011 (diff | hist) . . (-48) . . UAB Galaxy Workshop Tutorial
- 13:57, 13 September 2011 (diff | hist) . . (+316) . . N Galaxy DNA-Seq Tutorial (Created page with "= Galaxy DNA-Seq Tutorial = == Linking to data == == Grommin Data == == Assessing the quality of the data == == Performing cleanup == == Short read alignment to referenc...")
- 13:55, 13 September 2011 (diff | hist) . . (-243) . . UAB Galaxy Workshop Tutorial (Moving DNA-Seq and RNA-Seq to their own pages)
- 12:59, 13 September 2011 (diff | hist) . . (+123) . . UAB Galaxy Workshop Tutorial (→Getting data into Galaxy: Added links to data uploading, still need cleanup.)
- 12:54, 13 September 2011 (diff | hist) . . (+36) . . UploadLargeData (Added image)
- 12:51, 13 September 2011 (diff | hist) . . (+57) . . N File:UploadLinkDataFilesGUI.jpg (Picture of linking in directory of files to use in Galaxy) (top)
- 12:45, 13 September 2011 (diff | hist) . . (+265) . . UAB Galaxy Workshop Tutorial (→Getting data into Galaxy)
- 12:12, 13 September 2011 (diff | hist) . . (+811) . . UAB Galaxy Workshop Tutorial (→UAB Galaxy DNA-Seq Step-by-Step Tutorial)
- 11:48, 13 September 2011 (diff | hist) . . (+19) . . UAB Galaxy Workshop Tutorial (→Overview: Mention workflows)
- 11:44, 13 September 2011 (diff | hist) . . (+523) . . N UAB Galaxy Workshop Tutorial (Creation of page)
- 11:12, 13 September 2011 (diff | hist) . . (+8) . . Galaxy (Moving tutorials to a separate page)
- 14:52, 12 September 2011 (diff | hist) . . (+406) . . Galaxy (Structure for Tutorial started)
- 11:47, 8 September 2011 (diff | hist) . . (+55) . . 2011 HPC Boot Camp (Adding section on logging in and uploading data to galaxy)
- 11:20, 8 September 2011 (diff | hist) . . (+9) . . m Galaxy (SRMA mention)
- 10:58, 8 September 2011 (diff | hist) . . (0) . . m Galaxy (Typo)
- 10:57, 8 September 2011 (diff | hist) . . (-1,279) . . Galaxy (Major overhaul, added script for updating indices)
- 16:46, 7 September 2011 (diff | hist) . . (+1,817) . . Galaxy (Added bash script)
- 16:34, 25 August 2011 (diff | hist) . . (+549) . . Galaxy (→Adding Novel Datasets)
- 16:30, 25 August 2011 (diff | hist) . . (+1,229) . . Galaxy (→Adding Novel Datasets)
- 16:16, 25 August 2011 (diff | hist) . . (+15) . . Galaxy (→Adding Novel Datasets)
- 16:11, 25 August 2011 (diff | hist) . . (+136) . . Galaxy (→Adding Novel Datasets)
- 16:07, 25 August 2011 (diff | hist) . . (+701) . . Galaxy (→Datasets)
- 13:07, 25 August 2011 (diff | hist) . . (+212) . . Galaxy (→BWA Indices)
- 13:02, 25 August 2011 (diff | hist) . . (+2) . . Galaxy (→Sam and FAIDX indices)
- 13:02, 25 August 2011 (diff | hist) . . (+36) . . Galaxy (→BWA Indices)
- 13:01, 25 August 2011 (diff | hist) . . (+178) . . Galaxy (→Datasets)
- 12:56, 25 August 2011 (diff | hist) . . (+1,121) . . Galaxy (→Datasets)
- 12:29, 25 August 2011 (diff | hist) . . (+125) . . Galaxy (→Datasets)
- 11:08, 25 August 2011 (diff | hist) . . (+321) . . Galaxy (→Directory Creation)
- 10:06, 25 August 2011 (diff | hist) . . (+737) . . Galaxy (Additional information about setting up a new dataset)
- 10:38, 12 May 2011 (diff | hist) . . (-2,970) . . Galaxy (Removed Cheaha Iinstallation Information, now on own wiki)
- 14:31, 11 May 2011 (diff | hist) . . (+44) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"): Top Hat)
- 16:33, 9 May 2011 (diff | hist) . . (+92) . . m Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 16:30, 9 May 2011 (diff | hist) . . (+165) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"): velevet)
- 15:56, 9 May 2011 (diff | hist) . . (+262) . . Galaxy (Added section for NextGen indices)
- 15:07, 9 May 2011 (diff | hist) . . (+341) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"): srma)
- 14:57, 9 May 2011 (diff | hist) . . (+64) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 14:56, 9 May 2011 (diff | hist) . . (+169) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 14:25, 9 May 2011 (diff | hist) . . (+117) . . m Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 14:09, 9 May 2011 (diff | hist) . . (+317) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 13:14, 9 May 2011 (diff | hist) . . (+120) . . Galaxy (→Next Gen Sequencing Software (order of install on "cheaha"))
- 13:05, 9 May 2011 (diff | hist) . . (+283) . . Galaxy (→Next Gen Sequencing Software)
- 17:17, 6 May 2011 (diff | hist) . . (+96) . . Galaxy (→Next Gen Sequencing Software)
- 16:40, 5 May 2011 (diff | hist) . . (+122) . . m Galaxy (→Next Gen Sequencing Software)
- 16:34, 5 May 2011 (diff | hist) . . (+732) . . Galaxy (→Cheaha Cluster Installation Setup Notes)
- 16:28, 5 May 2011 (diff | hist) . . (+34) . . m Galaxy (Adding Cheaha Setup Info, reordering hierarchy)
- 14:55, 1 March 2011 (diff | hist) . . (+379) . . Galaxy (Redesign to make things more consistent)
- 14:46, 1 March 2011 (diff | hist) . . (+17) . . m Galaxy
- 14:45, 1 March 2011 (diff | hist) . . (+306) . . Galaxy (SNPeff)
- 17:45, 25 February 2011 (diff | hist) . . (+547) . . Galaxy (GNU Plot problems with Galaxy VM)
- 17:41, 25 February 2011 (diff | hist) . . (+116) . . Galaxy (→Temporary Directory and the $TEMP variable)
- 16:00, 23 February 2011 (diff | hist) . . (+165) . . Galaxy (LD_LIBRARY_PATH for samtools)
- 18:25, 16 February 2011 (diff | hist) . . (+297) . . Galaxy (Temporary directory and $TEMP variable)
- 17:46, 16 February 2011 (diff | hist) . . (-173) . . Galaxy (→Post Processing: Makefile fix)
- 17:37, 16 February 2011 (diff | hist) . . (+973) . . Galaxy (→Post Processing: Fix using gzopen64 contaiing zlib)
- 15:55, 16 February 2011 (diff | hist) . . (+281) . . Galaxy (→Post Processing: gzopen64 on ubuntu version of zlib)
- 15:42, 16 February 2011 (diff | hist) . . (+86) . . m Galaxy (removing zlib-devel)
- 15:39, 16 February 2011 (diff | hist) . . (+222) . . Galaxy (→Post Processing: Removing duplicate zlibs)
- 17:54, 15 February 2011 (diff | hist) . . (+882) . . Galaxy (→Post Processing: SAML problems)
- 17:46, 15 February 2011 (diff | hist) . . (+101) . . Galaxy (megablast info)
- 17:33, 15 February 2011 (diff | hist) . . (+105) . . Galaxy
- 17:30, 15 February 2011 (diff | hist) . . (+86) . . Galaxy
- 17:18, 15 February 2011 (diff | hist) . . (+97) . . Galaxy
- 16:44, 15 February 2011 (diff | hist) . . (+84) . . m Galaxy
- 16:36, 15 February 2011 (diff | hist) . . (+467) . . Galaxy
- 15:35, 15 February 2011 (diff | hist) . . (+259) . . m Galaxy
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