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SHRiMP

From UABgrid Documentation

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module load shrimp/shrimp-1.3
 
module load shrimp/shrimp-1.3
 
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[[Category:Software]][[Category:Bioinformatics]]

Latest revision as of 09:39, 4 April 2012

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SHRiMPis a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.

Project website: http://compbio.cs.toronto.edu/shrimp/

[edit] Load SGE module

The following Modules files should be loaded for this package:

module load shrimp/shrimp-1.3