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MarthLab

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module load marthlab/mosaik  
 
module load marthlab/mosaik  
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]

Latest revision as of 09:17, 4 April 2012

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MOSAIK is a reference-guided assembler comprising of four main modular programs:

  • MosaikBuild
  • MosaikAligner
  • MosaikSort
  • MosaikAssembler.

MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.

Project website: http://bioinformatics.bc.edu/marthlab/

[edit] Load SGE module

The following Modules files should be loaded for this package:

module load marthlab/mosaik