Namespaces

Variants
Actions
Personal tools

MarthLab

From UABgrid Documentation

(Difference between revisions)
Jump to: navigation, search
(Created page with generic stub)
 
(added category bioinformatics NGS)
 
(3 intermediate revisions by one user not shown)
Line 11: Line 11:
 
MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.
 
MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.
  
Project website: http://bioinformatics.bc.edu/marthlab/
+
'''Project website:''' http://bioinformatics.bc.edu/marthlab/
 
+
  
 +
====Load SGE module====
 
The following Modules files should be loaded for this package:
 
The following Modules files should be loaded for this package:
 
<pre>
 
<pre>
 
module load marthlab/mosaik  
 
module load marthlab/mosaik  
 
</pre>
 
</pre>
 +
 +
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]

Latest revision as of 09:17, 4 April 2012

This page is a Generic stub.

You can help by expanding this page..


MOSAIK is a reference-guided assembler comprising of four main modular programs:

  • MosaikBuild
  • MosaikAligner
  • MosaikSort
  • MosaikAssembler.

MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.

Project website: http://bioinformatics.bc.edu/marthlab/

[edit] Load SGE module

The following Modules files should be loaded for this package:

module load marthlab/mosaik