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MarthLab

From UABgrid Documentation

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'''Project website:''' http://bioinformatics.bc.edu/marthlab/
 
'''Project website:''' http://bioinformatics.bc.edu/marthlab/
  
 +
====Load SGE module====
 
The following Modules files should be loaded for this package:
 
The following Modules files should be loaded for this package:
 
<pre>
 
<pre>
 
module load marthlab/mosaik  
 
module load marthlab/mosaik  
 
</pre>
 
</pre>

Revision as of 13:50, 2 April 2012

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MOSAIK is a reference-guided assembler comprising of four main modular programs:

  • MosaikBuild
  • MosaikAligner
  • MosaikSort
  • MosaikAssembler.

MosaikBuild converts various sequence formats into Mosaik’s native read format. MosaikAligner pairwise aligns each read to a specified series of reference sequences. MosaikSort resolves paired-end reads and sorts the alignments by the reference sequence coordinates. Finally, MosaikAssembler parses the sorted alignment archive and produces a multiple sequence alignment which is then saved into an assembly file format.

Project website: http://bioinformatics.bc.edu/marthlab/

Load SGE module

The following Modules files should be loaded for this package:

module load marthlab/mosaik