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Galaxy DNA-Seq Tutorial

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Revision as of 13:57, 13 September 2011 by Ozborn@uab.edu (Talk | contribs)

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Contents

Galaxy DNA-Seq Tutorial

Linking to data

Grommin Data

Assessing the quality of the data

Performing cleanup

Short read alignment to reference genome using BWA

Looking at differences with SNPEff

De novo assembly (time permitting)

Viewing results in IGV