Namespaces

Variants
Actions
Personal tools

Eigenstrat

From UABgrid Documentation

(Difference between revisions)
Jump to: navigation, search
(added category software)
Line 11: Line 11:
 
module load eigenstrat/eigenstrat
 
module load eigenstrat/eigenstrat
 
</pre>
 
</pre>
 +
 +
 +
[[Category:Software]]

Revision as of 08:47, 4 April 2012

This page is a Generic stub.

You can help by expanding this page..


"The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes."

Project website: http://genepath.med.harvard.edu/~reich/Software.htm

Load SGE module

The following Modules file should be loaded for this package:

module load eigenstrat/eigenstrat