From UABgrid Documentation
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"Amber" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos.
Amber is compiled using Intel compilers and uses OpenMPI for the parallel binaries.
Load SGE module
The following Modules files should be loaded for this package (the amber module will automatically load the openmpi module):
module load amber/amber-10-intel
Use the openmpi parallel environment in your job script (example for a 4 slot job)
#$ -pe openmpi 4